Family U40

Family

Summary Holotypes Alignment Tree Genomes Literature

Summary for family U40

Family type peptidaseU40.001 - protein P5 murein endopeptidase (bacteriophage phi-6) (bacteriophage phi-6), MEROPS Accession MER0001749 (peptidase unit: 1-220)
Content of familyPeptidase family U40 contains only the protein P5 murein endopeptidase from bacteriophage phi-6.
History Identifier created: Proteolysis in Cell Function, pp13-21, IOS Press, Amsterdam (1997)
Catalytic typePeptidase of unknown catalytic type
Active siteThe nature of the active site is unknown.
Activities and specificitiesLytic activity against the cell walls of several gram-negative bacteria has been detected, but none against gram-positive species (Caldentey & Bamford, 1992). It is thought that enzyme cleaves the cell wall peptide bridge formed by meso-2,6-diaminopimelic acid and D-Ala (Caldentey, 2004).
Molecular structureProtein P5 murein endopeptidase is a single chain of approximately 24 kDa that does not contain any Cys residues. The tertiary structure has not been determined.
Clanunassigned
Basis of clan assignmentProtein fold and active site residues are not known for any members of this family.
Distribution of family Bacteria -  
Archaea -  
Protozoa -  
Fungi -  
Plants -  
Animals -  
Viruses details  
Biological functionsProtein P5 murein endopeptidase is a component of the bacteriophage lysin (Caldentey, 2004).
Statistics for family U40Sequences:2
Identifiers:1
Identifiers with PDB entries:0
Downloadable files Sequence library (FastA format)
Sequence alignment (FastA format)
Peptidases and Homologues MEROPS ID Structure
protein P5 murein endopeptidase (bacteriophage phi-6)U40.001-
family U40 unassigned peptidasesunassigned-